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(1995)Journal Article
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(2022)ThesisAntibodies are increasingly useful therapeutics, and examples include the checkpoint inhibitors pembrolizumab1 and ipilimumab2 in cancer immunotherapy, and anti tau therapies in Alzheimer’s disease and dementia.3,4 However, specific applications requiring cytosolic delivery of the antibody, or transport across the blood-brain barrier pose challenges to antibody therapeutics. These issues may reduce the effectiveness of immunotherapy and restrict it to extracellular targets. Conjugating polymers to proteins and enzymes has been very effective at improving their stability and pharmacokinetics,5–8 and similar approaches have been studied for antibody conjugation.9–12 Finding an effective polymeric delivery system for antibodies can greatly improve immunotherapy. In this work three strategies were explored for the encapsulation and bioconjugation to antibodies. The first approach is the encapsulation via electrostatic interactions between the antibody and a charged block copolymer to form polyion complex (PIC) micelles. Polyphosphonium block copolymers were studied for the first time to encapsulate antibodies, and were compared to their ammonium counterpart. While this approach has the advantage of being reversible, the polymer-antibody electrostatic interactions were too weak for biological applications, and delivery by this means would require a crosslinking strategy. The second approach involves covalent attachment of polymers on the antibody’s surface via a grafting from polymerisation. An oxygen tolerant technique was employed for the screening of a large number of samples in low volumes (<100 μL). Successful grafting was demonstrated by AF4 and gel electrophoresis. Enzyme-linked immunosorbent assay (ELISA) showed retention of up to 40% binding activity relative to the native antibody with a marked improvement in stability. The third strategy introduces a novel acid sensitive linker for the reversible covalent attachment of polymers to the antibody’s surface. This was achieved by using Diels-Alder chemistry to create an activated PEG that forms an amide with a conformational lock similar to citraconic anhydride upon conjugation to the amines on the antibody. The ability of the linker to cleave at pH 5.5 is demonstrated, resulting in almost complete recovery of the original binding activity of the antibody. Overall, the reversible covalent attachment investigated here seems the most promising, and combining the high throughput method with the cleavable linker approach holds great potential for advancing in immunotherapy. References (1) Reck, M. Pembrolizumab as First-Line Therapy for Metastatic Non-Small-Cell Lung Cancer. Futur. Med. 2018, 10, 93–105. (2) Gao, J.; Ward, J. F.; Pettaway, C. A.; Shi, L. Z.; Subudhi, S. K.; Vence, L. M.; Zhao, H.; Chen, J.; Chen, H.; Efstathiou, E.; Troncoso, P.; Allison, J. P.; Logothetis, C. J.; Wistuba, I. I.; Sepulveda, M. A.; Sun, J.; Wargo, J.; Blando, J. VISTA Is an Inhibitory Immune Checkpoint That Is Increased after Ipilimumab Therapy in Patients with Prostate Cancer. Nat. Med. 2017, 23 (5), 551–555.. (3) Pedersen, J. T.; Sigurdsson, E. M. Tau Immunotherapy for Alzheimer’s Disease. Trends Mol. Med. 2015, 21 (6), 394–402. (4) Castillo-Carranza, D. L.; Sengupta, U.; Guerrero-Munoz, M. J.; Lasagna-Reeves, C. A.; Gerson, J. E.; Singh, G.; Estes, D. M.; Barrett, A. D. T.; Dineley, K. T.; Jackson, G. R.; Kayed, R. Passive Immunization with Tau Oligomer Monoclonal Antibody Reverses Tauopathy Phenotypes without Affecting Hyperphosphorylated Neurofibrillary Tangles. J. Neurosci. 2014, 34 (12), 4260–4272. (5) Abolmaali, S. S.; Tamaddon, A. M.; Salmanpour, M.; Mohammadi, S.; Dinarvand, R. Block Ionomer Micellar Nanoparticles from Double Hydrophilic Copolymers, Classifications and Promises for Delivery of Cancer Chemotherapeutics. Eur. J. Pharm. Sci. 2017, 104 (January), 393–405. (6) Kurakhmaeva, K. B.; Djindjikhashvili, I. A.; Petrov, V. E.; Balabanyan, V. U.; Voronina, T. A.; Trofimov, S. S.; Kreuter, J.; Gelperina, S.; Begley, D.; Alyautdin, R. N. Brain Targeting of Nerve Growth Factor Using Poly(Butyl Cyanoacrylate) Nanoparticles. J. Drug Target. 2009, 17 (8), 564–574. (7) Jiang, Y.; Fay, J. M.; Poon, C. D.; Vinod, N.; Zhao, Y.; Bullock, K.; Qin, S.; Manickam, D. S.; Yi, X.; Banks, W. A.; Kabanov, A. V. Nanoformulation of Brain-Derived Neurotrophic Factor with Target Receptor-Triggered-Release in the Central Nervous System. Adv. Funct. Mater. 2017, 1703982, 1–11. (8) Klyachko, N. L.; Manickam, D. S.; Brynskikh, A. M.; Uglanova, S. V.; Li, S.; Higginbotham, S. M.; Bronich, T. K.; Batrakova, E. V.; Kabanov, A. V. Cross-Linked Antioxidant Nanozymes for Improved Delivery to CNS. Nanomedicine Nanotechnology, Biol. Med. 2012, 8 (1), 119–129. (9) Bin Liu, Khushboo Singh , Shuai Gong , Mine Canakci, Barbara A. Osborne, and S. T. Protein Antibody Conjugates PACs A Plug‐and‐Play Strategy for Covalent Conjugation and Targeted Intracellular Delivery of Pristine Proteins. Angew. Chemie 2021, 133, 12923–12928. (10) Chan, L. J.; Bulitta, J. B.; Ascher, D. B.; Haynes, J. M.; Mcleod, V. M.; Porter, C. J. H.; Williams, C. C.; Kaminskas, L. M. PEGylation Does Not Signi Fi Cantly Change the Initial Intravenous or Subcutaneous Pharmacokinetics or Lymphatic Exposure of Trastuzumab in Rats but Increases Plasma Clearance after Subcutaneous Administration. Mol. Pharm. 2015, 12, 794–809. (11) Subasic, C. N.; Ardana, A.; Chan, L. J.; Huang, F.; Scoble, J. A.; Butcher, N. J.; Meagher, L.; Chiefari, J.; Kaminskas, L. M.; Williams, C. Poly ( HPMA- Co -NIPAM ) Copolymer as an Alternative to Polyethylene Glycol-Based Pharmacokinetic Modulation of Therapeutic Proteins. Int. J. Pharm. 2021, 608 (September), 121075. (12) Keita Hironaka,a,b Erika Yoshihara, Ahmed Nabil, James J. Lai, A. K. and M. E. Conjugation of Antibody with Temperature-Responsive Polymer via in Situ Click Reaction to Enable Biomarker Enrichment for Increased Diagnostic Sensitivity. Biomater. Sci. 2021, 9, 4870–4879.
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(2022)ThesisChronic wounds are a major issue in public health. One of the contributing factors in the development of chronic wounds is bacterial infection, which is exacerbated by the presence of multidrug-resistant (MDR) bacteria. One approach to tackle wound infection is the use of non-antibiotic antimicrobials with rapid killing effect without inducing resistance. This thesis aims to investigate the application of antimicrobial polymers and iodine in the development of antimicrobial wound dressing platforms. Firstly, contact-active antimicrobial wound dressings were explored. An inert silk sponge was prepared as the substrate and functionalized with antimicrobial polymers on the surface via layer-by-layer assembly. Electrostatic interactions in the multilayer construct confined the antimicrobial polymers and prevented leaching. The sponge was able to suck bacteria into the porous network and kill them upon contact as evidenced by up to 4 log10 reduction against Gram-negative and Gram-positive bacteria. Additionally, the antimicrobial efficacy was found to be strongly affected by the construction of multilayer assembly. As the contact-active mechanism may reach saturation point on the surface, in the second approach, an antimicrobial platform with a release-killing mechanism was developed. Employing the ability of silk to self-assemble into a thin film, antimicrobial polymers were loaded in the silk matrix. The release of antimicrobial polymers correlated to polymer concentration, silk to polymer ratio, and film configuration. The efficacy of the films was demonstrated by 5 to 7 log10 reduction of planktonic and 3 to 7 log10 reduction of biofilm cells against Pseudomonas aeruginosa and Staphylococcus aureus, including MDR strains. Furthermore, the straightforward coating method was as effective on glass or cotton substrates. The third approach investigated the immobilization of iodine onto wound dressings for a sustained release system. The immobilization was facilitated by polyamide iodophors that were synthesized on the dressing via plasma polymerization of the gaseous amide monomers. The antimicrobial activity correlated strongly to the structure of the polyamide with the short and linear polymer recorded 4 log10 reduction against P. aeruginosa and 7 log10 reduction S. aureus, including a MDR strain. Overall, the immobilization of iodophors on wound dressings demonstrated a potential new approach in reducing bacteria proliferation in wounds.
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(2023)ThesisHollow fibre (HF) membrane modules implemented in submerged membrane bioreactors (MBR) and pressurised applications have been widely accepted for both wastewater treatment and polishing wastewater treatment plant (WWTP) effluents. Further innovations in membrane technologies and wastewater treatment market competitiveness, however, are restricted by high manufacturing and operational costs, where a trade-off exists between membrane system design and filtration performance. In the current work, the effects of HF lengths, physical characteristics and system fouling mitigation techniques were investigated to further optimize filtration performance. The following experimental approaches were considered, (1) small-scale filtration experiments with various HF membrane lengths and fibre dimensions, (2) the development of theoretical filtration models and the assessment of filtration simulations, and (3) pilot-scale filtration performance of prototype large-scale membrane modules in wastewater. Two mathematical models for constant TMP filtration using dead-end HF membranes were developed using firstly the Darcy friction factor, and secondly, the Hagen–Poiseuille model. The models allowed for the overall theoretical lumen pressure drop values, local flux distributions and overall filtration performance to be extensively studied. Laboratory-scale filtration experiments using HF membranes of different lengths (0.5 – 2.0 m) were undertaken with the objective of demonstrating the influence of lumen pressure drop in overall filtration performance. Though greater permeate volumes were obtained when using modules prepared with longer HF membranes, such systems experienced greater lumen pressure loss. These losses reduced the operating TMPs effectiveness, resulting in greater non-uniformity in local fluxes across the length of the HF membranes. The magnitude of losses and degree of non-uniformity in such longer systems were extensively studied, allowing for the identification of effective loss reduction techniques, such as the incorporation of HF membranes with larger inner diameters (ID) in the membrane modules. Pilot scale investigations were undertaken to evaluate the influence of HF length on overall performance in real wastewater feeds. Prototype full-scale modules were prepared with HF membrane of different lengths (1.6 – 2.0 m) and ID. Longer modules demonstrated greater filtration performance as the influence of increased lumen pressure drop due to longer fibre lengths was effectively offset by the enhanced fibre dimensions. Overall, the results presented in this study reveal that a significant interplay exists between module design (including length, packing density, slack, and fibre size), filtration process design (feedwater quality, biomass concentration, aeration rate, aeration/shear efficiency) and the critical flux (of threshold flux) conditions. In conclusion, the incorporation of longer length HF membranes in pressurised and submerged MBR modules has been proven to be a promising innovation which offers enhanced filtration capabilities.
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(2023)ThesisThis work explores how reversible light-induced pH changes can be increased and applied to control pH-responsive systems with light. Chapter 2 investigates how substitution patterns influence the acidity of merocyanine photoacids in the dark as well as under light irradiation. The parameters which are crucial for increasing light-induced pH changes are defined and applied to synthesized merocyanine photoacids. The light-induced pH changes starting from varying initial pH values are explored and a model is developed to estimate these based on experimentally defined parameters. Transient absorption spectroscopy was used to explore the influence of the protonation state of the merocyanine form (MCH vs MC) on the photoswitching efficiency. A python model is developed to describe the pH- recovery in the dark. Chapter 3 introduces an improved merocyanine photoacid, designed by principles outlined in Chapter 2. The acidity parameters and photoswitching abilities are characterized. The pH switching capacity is investigated and extended into the basic pH range. The light-induced pH switch by the improved photoacid is applied to control the protonation state of an indicator dye. Chapter 4 applies light-induced pH changes to influence the secondary structure of pH-sensitive DNA. The transient formation of these structures is explored. The influence of the initial pH value and a DNA binder on the ratio and kinetics of the system components is investigated. Chapter 5 applies light-induced pH changes to influence the properties of different types of supramolecular polymers. The challenges of applying merocyanine photoacids to generate structural changes of supramolecular polymers by influencing the components protonation state are highlighted. Chapter 6 presents brief conclusions and a future outlook for this research field.
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(2023)ThesisEpidemic thunderstorm asthma (ETSA) outbreaks are triggered by airborne pollen allergens combined with thunderstorm activity. ETSA can affect anyone, as observed in the world’s largest ETSA event in Australia. Allergens from rye grass pollen affect the respiratory airways and the fundamental physicochemical causes, biochemical interactions, and the role of the thunderstorm in ETSA have been the source of much speculation. In this thesis, the physicochemical interactions of thunderstorm-derived reactive oxygen nitrogen species (RONS) and pollen-derived molecules are examined. It is hypothesised that RONS from the plasma-activated water (PAW) react with the airborne pollen allergens, exerting physicochemical changes to enhance allergenicity and subsequently causing ETSA. Simple biomimetic models are demonstrated, examining the key biointerfacial interactions and the influences of the conditions of plasma formation, pH, and temperature, employing advanced interface-sensitive techniques including QCM-D and neutron reflectometry. Firstly, cellulose-mucin interactions were analysed, mimicking the interactions between the walls of inhaled pollen (intine) and mucosa of the respiratory tract (mucin). Interaction with plasma-treated cellulose surfaces led to adsorption and conformational alterations to mucin, potentially indicating changes to the permeability of the mucosa. Secondly, the effect of PAW on the interactions between a model-allergen plant protein and lipid monolayers mimicking alveolar surfactant was studied. The protein took up RONS and PAW-treated protein showed stronger adsorption to the lipid monolayers, implying PAW-treatment enhances transport of the protein into lung tissue. Lastly, the effect of PAW on allergen penetration into epithelial bilayers was elucidated. Solid-supported model lipid bilayers were allowed to interact with model allergen and rye grass derived proteins to deduce the structural integrity of the membrane. PAW-treatment increased adsorption of the proteins to the lipid bilayers, and enabled the penetration into the membrane, corroborating the enhanced allergenicity of PAW-treated allergens. Overall, PAW was seen to enhance three relevant nonspecific biointerfacial interactions; these physicochemical studies complement extant in vitro cell studies in an effort to enable the development of effective monitoring platforms, diagnostics, and therapeutic interventions for the prevention and treatment of ETSA.
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(2023)ThesisProteins and enzymes are highly versatile materials that are involved in essentially every biological process, making them valuable tools and targets in the field of medicine. This thesis explores two distinct aspects of their applications: Part I focuses on the formation of responsive nanoparticles for drug delivery, while Part II delves into the development of small molecular inhibitors and their use in a novel protease assay. Each part will start with a separate literature review, to give the reader a brief background about the topic. Their biocompatibility, non-toxicity, and ability to specifically interact with cellular receptors make proteins and enzymes promising materials in the design of nanoparticles for drug-delivery applications. In many cases, a covalent modification of the protein is required to drive the formation of nanoparticles which can inadvertently change the properties of the underlying protein. One possibility to overcome this problem is to make the covalent modification reversible by the introduction of responsive linker molecules, which additionally allows targeting. Therefore, Part I of this thesis will explore nanoparticles that degrade in response to specific environmental cues, such as reducing agents, UV-light, or hypoxia. The first chapter is a comprehensive review of the literature on different protein-nanoparticle and the use of responsive linker systems in drug delivery applications. Chapter 2 of the thesis will present the synthesis of PEGylated enzyme nanoparticles designed for delivering catalytically active enzymes into cells. The results obtained will demonstrate the triggered disassembly of the nanoparticles and the subsequent release of catalytically active enzymes, leading to cellular toxicity. Moving on to Chapters 3 and 4, reductive-responsive nanoparticles composed of bovine serum albumin (BSA) and a hypoxia-responsive polymer will be featured as an intracellular drug delivery vehicle for nucleic acids. In Part II of the thesis, the focus is shifted to the design of small molecule inhibitors for acetylcholinesterase (AChE) and their use in the development of a novel protease assay. AChE has important implications in the treatment of Alzheimer's and other diseases. After a short literature review in Chapter 5 discussing the enzyme and past development of its inhibitors, Chapter 6 shows the journey in the design of potent, primary amine-containing inhibitors of AChE based on several known scaffolds. The increased polarity of the molecules hinders their ability to cross the blood-brain barrier, suggesting a potential application in the treatment of functional dyspepsia. Lastly, Chapter 7 deals with the development of a new proteases assay based on the inhibitors synthesized in the previous chapter. Proteases play a crucial role in many biological processes and are thus important medical markers for various diseases. The effect of the potency of the inhibitors after covalent modification with short peptides was evaluated and a mathematical model developed to predict the sensitivity of the assay.
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(2024)ThesisThe design of advanced hollow fibre ultrafiltration (UF) membrane technologies for use in wastewater treatment facilities has culminated from a combination of improvements in plant operation and optimising feed water interactions. With global demands in water quality increasing, this has placed increased pressure on MBR factories to develop high strength, anti-fouling fibre modules with improved permeabilities. The fabrication of such membranes, however, is restricted by the trade-off that exists between mechanical strength and filtration properties, as well as scalability concerns that arise when transitioning from laboratory trials to field testing of prototypes. This places increased importance on the need to establish a reliable formulation plan that addresses these trade-off limitations, in addition to furthering our understanding of membrane-foulant interactions. Modifications of polymer concentration will offer deeper insight into the role that polymer phase materials have on membrane formation and high strength performance. Further variations in pore-former content will provide a route towards optimising membrane surface porosity, translating into potential improvements in fibre permeability and anti-fouling propensity. Three different experimental approaches were implemented to assess the impact of fibre composition on membrane performance. These include (1) modifying the total concentration of poly(vinylidene fluoride) (PVDF) material, (2) tailoring the composition of PVDF material with distinct molecular weights, and (3) adjusting the proportion of poly(vinyl pyrrolidone) (PVP) and poly(ethylene glycol) (PEG) pore-forming additives. Microscopy techniques were used to document any structural changes across each formulation series, whilst porometer and tensile testing instruments were utilised to provide insight into membrane permeability and strength, respectively. Membranes formulated with elevated PVDF concentrations were found to exhibit improvements in mechanical integrity at the expense of reduced clean water fluxes. This was overcome by optimizing the incorporated PVDF molecular weight, which allowed for incremental boosts in toughness without adversely affecting permeability. Testing also revealed that fibres formed with higher concentrations of pore-forming agents, most notably PEG material, were found to be more permeable. Feedwater filtration cycling was implemented to provide insight into the relative fouling behaviour of membranes formed via these three approaches. Changes in resistance were found to be primarily dictated by membrane pore size, with intermediary pore size distributions being desirable targets for balancing out the effects of short- and long-term filtration. By tracing these trends in fouling propensity back to underlying fibre compositions, this study reinforces the importance of adjusting polymer formulations for achieving high strength, anti-fouling membranes. This study also acknowledges the limitations that exist in comparing laboratory-scale filtration data of fibre samples to prototype field testing of full-scale modules. Addressing these drawbacks through an analysis of feedwater conditions used in research and industry allows us to reach an informed decision on selecting appropriate formulations in the design of innovative membrane technologies.
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(2024)ThesisReceptor clustering is one of the most common mechanisms for controlling cell fate in nature, and strategies capable of directing this behaviour hold significant therapeutic potential. One prominent example is the TRAIL protein (TNF-related apoptosis inducing ligand), which selectively induces apoptosis in cancer cells by clustering death receptors DR4 and DR5. Although a potent chemotherapeutic, its clinical use has been hampered by its short circulation half-life. In this thesis, multivalent polymer scaffolds capable of presenting DR4/5 binding peptide ligands were developed as synthetic TRAIL mimics. In any synthetic protein mimic, directing the conformational structure to precisely control the spacing and orientation of multiple ligands is a major challenge. The two scaffolds in this thesis applied different strategies to achieve this. The first scaffold was a core-crosslinked micelle system with surface functionality for attachment of DR5 binding peptides. Micelles featuring varying peptide densities were synthesized and carefully characterized. These micelles successfully induce apoptosis in a colon cancer cell line (COLO205) via DR5 clustering. Micelles with a peptide density of 15% (roughly 1 peptide / 45 nm2) displayed the strongest activity with an IC50 value of 0.8 μM (relative to peptide), suggesting a statistical network of monomeric ligands may suffice to drive DR4/5 signalling. However, significantly improved activity could be achieved using star polymers with a hydrophobic core. Structural characterization by DOSY-NMR and surface plasmon resonance revealed that the improved activity came from the polymer folding in solution, which positioned the peptides in a well-defined manner on the periphery of the star, enhancing their accessibility to DR5. By varying the chemistry of the inner block, a new lead structure of 3-arm PBzA40-b-PDMA40-WDCL was identified in library screening with IC50 values in the low nanomolar range to COLO205. These leads show toxicities approaching that of the native TRAIL protein, but from a material that would be expected to show upwards of 20 h circulation half-lives in vivo.
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(2021)ThesisImprovements in liquid lithium-ion battery electrolytes using of metal organic frameworks (MOFs) as a functional decoration on polymer membrane separators were investigated using a combination of experimental and theoretical methods. Zirconium-based MOF UiO-66 was introduced to the polymer support using the mixed matrix membrane (MMM) method. The method allowed the one-step manufacture of a robust, mechanically pliable polymer-MOF membrane composite of high MOF loading. MOF-MMMs imparted improved electrochemical behaviours such as a widened potential operating window, near-unity transference number, and increased presence of solid electrolyte interphase (SEI) components crucial to battery performance. Density functional theory (DFT) calculations were also performed to provide insights regarding electrolyte solvation in the presence of MOF. A simple dip-coating technique was utilised to modify the surface of the MOF-MMMs with polydopamine (PDA) for further improvement of the electrochemical properties. Increased transference numbers, as well as stability during rate cycling, were observed with the resulting PDA-MMM owing to the improved electrode/electrolyte interface. However, surface analyses using x-ray photoelectron spectroscopy (XPS) showed that there are reduced amounts vital SEI components compared to the original MOF-MMM support. The last section further explores the versatility of UiO-66 and tackled the preparation of gel polymer electrolytes (GPEs) decorated with UiO-66 via phase inversion technique. Using the phase inversion method, the fabricated GPE contained pores from both polymer substrate and the intrinsic pores of the 3D nanomaterial for improvement of electrochemical properties. It was demonstrated in this work that the MOF GPE is equally inert and suitable in ether or carbonate-based electrolytes. Overall, this study demonstrated the versatility of UiO-66 metal organic frameworks for use as a functional nanofiller for electrolyte membranes. With the use of inexpensive membrane fabrication methods, the composites obtained are viable for lithium-metal battery applications. Similarly, insights drawn can provide a springboard towards future study of MOF-based electrolytes.