This DATSETNAMEreadme.txt file was generated on 2022-9-21 by Jessica Eastick



GENERAL INFORMATION

1. Title of Dataset: The presence of cytoplasmic strings in human blastocysts is associated with the probability of clinical pregnancy with fetal heart
2. Author Information
	A. Principal Investigator Contact Information
		Name: Jessica Eastick
		Institution: IVF Australia
		Address: PO Box 417 New Lambton, New South Wales, 2305 Australia
		Email: Jessica.eastick@hunterivf.com.au

	B. Associate or Co-investigator Contact Information
		Name: Christos Venetis
		Institution: IVF Australia
		Address: Level 3/15 Bowden St, Alexandria NSW 2015
		Email: christos.venetis@ivf.com.au

	C. Alternate Contact Information
		Name: Simon Cooke 
		Institution: IVF Australia
		Address: Level 2/176 Pacific Hwy, Greenwich NSW 2065
		Email: simon.cooke@ivf.com.au

3. Date of data collection (single date, range, approximate date): 2018-2-01 to 2019-11-01

4. Geographic location of data collection: Newcastle, NSW Australia

5. Information about funding sources that supported the collection of the data: none to declare


SHARING/ACCESS INFORMATION

1. Licenses/restrictions placed on the data: CC BY

2. Links to publications that cite or use the data: DOI 10.1007/s10815-017-0928-0

3. Links to other publicly accessible locations of the data: Nil

4. Links/relationships to ancillary data sets: Yes

5. Was data derived from another source? no 
	A. If yes, list source(s): 

6. Recommended citation for this dataset: https://doi.org/10.1007/s10815-021-02213-1


DATA & FILE OVERVIEW

1. File List: 
<list all files (or folders, as appropriate for dataset organization) contained in the dataset, with a brief description> 

2. Relationship between files, if important: nil

3. Additional related data collected that was not included in the current data package:  NO

4. Are there multiple versions of the dataset? no
	A. If yes, name of file(s) that was updated: 
		i. Why was the file updated? 
		ii. When was the file updated? 


METHODOLOGICAL INFORMATION

1. Description of methods used for collection/generation of data: 
https://doi.org/10.1007/s10815-021-02213-1

2. Methods for processing the data: 
data generated in excel format, STATA used for all statistical analysis

3. Instrument- or software-specific information needed to interpret the data: 
 Microsoft Excel

4. Standards and calibration information, if appropriate: NIL

5. Environmental/experimental conditions: NIL

6. Describe any quality-assurance procedures performed on the data: NIL

7. People involved with sample collection, processing, analysis and/or submission: Jessica Eastick, Christos Venetis, Simon Cooke, Michael Chapman


DATA-SPECIFIC INFORMATION FOR: [FILENAME]


1. Number of variables: 77

2. Number of cases/rows: 300

3. Variable List: 


unique pt - unique patient identifier coded
number	- number of patient
SITE	- site
SLIDE ID	 - embryo slide ID
Patient ID	-unique patient identifier
OPU Date	   - date
IVY SCORE (FH%)	- continuous variable
FemaleAGE	- in years
Opu time	           -time in hours
Sperm Type	- sperm origin categorical
FSH type	 - categorical variable
duration of FSH (days)	- continuous variable
starting dose	- continuous variable
FSH total dose	- continuous variable
cycle drug type	- categorical variable
Antagonist or agonist	- categorical variable
dose	- continuous variable
days	- continuous variable
Trigger	- categorical variable
luteal support	- categorical variable
luteal duration	- continuous variable
luteal support 2	- continuous variable
luteal duration 2	- continuous variable
Male age	 - in years
AMH	- continuous variable
fertility	- categorical variable
reason for infertility	- categorical variable
primary or secondary	- categorical variable
donor 	- categorical variable yes no
HCG	- categorical variable yes no
FH	- categorical variable 
sacs	- categorical variable 
live birth	- categorical variable yes no
date first	- date
first bHG	- continuous variable
first P4	date - continuous variable
2nd bHCG	- - continuous variable
2nd P4	- continuous variable
FertilizationMethod	- categorical variable yes no
no eggs collected	- continuous variable
no injected	- continuous variable
embryo number 	- embryo well number
ET date	 - date 
EMBRYO FATE- - categorical variable 
Blastocyst stage	- categorical variable 
ICM	-categorical variable 
TE	-categorical variable 
Blast Y/N	-categorical variable yes/no
blastocyst qaulity coded	-categorical variable 
tPB2	- continuous variable time
PN_t1	- continuous variable time
PN_Val1	- number of pronuclei
tPNf	- continuous variable time
t2	- continuous variable time
t3	- continuous variable time
t4	- continuous variable time
t5	- continuous variable time
t6	- continuous variable time
t7	- continuous variable time
t8	- continuous variable time
tM	- continuous variable time
tSB	- continuous variable time
tB	- continuous variable time
tEB	- continuous variable time
tHB	- continuous variable time
Transferred	- number transferred 
TIME start	- continuous variable time
start stage of development	
Time ended	- continuous variable time
End stage of development	
Duration of CS	- continuous variable time
CS present Y/N	--categorical variable yes/no
Total number	- continuous variable 
Vesicles present Y/N	-categorical variable yes/no
Max no vesicles seen per string	- continuous variable 
Vesicle Direction	-categorical variable
region of blast    -categorical variable

																									
4. Missing data codes: 
cells left blank

5. Specialized formats or other abbreviations used: